Close up of human tissue under microscope.

Histology Services, Imaging Facility, Electron Microscopy Platform

Request a service

To request histology or imaging facility services, please contact the histology lab for a consultation.

Consultation

We provide comprehensive support for your research projects, offering state-of-the-art techniques and personalized consultation.

Our team will meet with you to thoroughly discuss your project and provide guidance on the best methods to handle your samples. This collaborative approach ensures that we understand your specific research goals and can design a tailored plan to meet your needs.

After the consultation, you will receive a detailed estimate for approval, along with precise instructions on how to prepare your samples for optimal results. We will then schedule an appointment for sample drop-off. To ensure the quality of your work, please note that samples must not be brought to the lab without a prior appointment.

Forms

All sample submissions must include the completed forms and the signed estimate. While forms are available on our website, our team is also available to assist with form completion during the consultation process.

To request services for histology, electron microscopy, or imaging, please ensure you complete the following required forms:

Note: Alternate formats for these documents are available upon request. Please contact us at histology_services@umanitoba.ca for more information.

Contact us

For service requests or consultations, please call 204-789-3508 or email histology_services@umanitoba.ca.

NOTE: While we offer the tools and expertise needed to prepare your samples for analysis, please note that the responsibility for analyzing and interpreting the resulting data lies with the principal investigator who provided the samples.

Electron microscopy services

Our facility offers comprehensive electron microscopy services to support researchers in processing biological tissues, cultured cells, bacteria, viruses, and nanoparticles for detailed ultrastructural analysis. We provide a full range of techniques, including tissue processing, embedding, sectioning, staining, and imaging, to meet the needs of your research projects.

Consultation

Our consultations provide an opportunity for meaningful collaboration, where we discuss your project in detail, answer your questions, and design a tailored plan for processing your samples.

After your consultation, we’ll send an estimate for your approval. Once confirmed, we’ll guide you on how to prepare your samples for optimal results and schedule a convenient drop-off appointment. To ensure the best service, please note that we can only accept samples by appointment.

Your samples should come with completed forms and a signed estimate. While these forms are available on our website, we’re here to help you complete them during your consultation to make the process seamless.

Our goal is to support your research every step of the way. From project planning to providing necessary fixatives and buffers for sample preparation, we take care of the details so you can focus on your work. Once we receive your samples, we handle everything else, delivering high-quality TEM images at your requested magnifications when your project is complete.

Sample preparation guidelines

To help you achieve the best possible results, please follow these guidelines for optimal tissue preparation:

Size:

  • Trim your tissues to 1mm cubes before fixation to maximize the quality of imaging.
  • Remove any non-essential attached tissues or organs, submitting only the parts that are significant to your research. For larger specimens, providing a biopsy is sufficient.

Fixation:

  • Use 3% glutaraldehyde in 0.1 M Sorensen’s buffer to fix all tissues or cells.
  • Contact the histology lab in advance to arrange pick-up of fresh fixative before cell harvest or animal sacrifice. We’re here to coordinate with you and support your timelines.
  • For brain or nerve tissues, we can supply a specialized combination of paraformaldehyde and glutaraldehyde to enhance preservation.
  • When working with animal samples, perfusion fixation is essential to maintain the integrity of fine structures.

Minimum fixation time:

  • Cells: 2 to 3 hours.
  • Tissue: 3 to 4 hours.

To ensure thorough fixation, make sure your tissue samples are fully immersed and freely floating in a volume of fixative that is at least 10 times the volume of the tissue itself.

Equipment

Our imaging facility is equipped with two state-of-the-art transmission electron microscopes (TEMs), providing researchers with the capability to observe subcellular changes. TEM techniques are invaluable for gaining deeper insights into how treatments, experimental conditions, or genetic modifications impact your samples, among many other factors.

We offer a variety of imaging and analysis tools to meet the diverse needs of your research, including:

Additionally, for a more quantitative analysis of experimental changes, we can incorporate machine learning techniques into the evaluation process, providing precise and reliable results.

Pricing

The pricing provided below applies to UM and affiliated researchers. For industry-specific pricing, please contact us.

TaskDescriptionItemCost
Buffers and fixative solutionsAll necessary buffers and solutions for tissue or cell fixation, including a storage buffer.Glutaraldehyde, Sorensen’s, phosphate buffer, sucrose$30 (up to 50ml)
Labour (1 hour)$50/hour
Tissue processing and embedding for EMPost-fixation of tissue or cells (pre-grossed) through to embedding in resin.Osmium tetroxide, alcohol dehydration, propylene oxide, EmBed 812 resin systemIncluded
1-10 blocks$250
Labour (6-hour set)$50/hour
Sectioning (diamond knife)Thick sectioning with toluidine blue, thin sectioning (90-100nm) and grid placement (200 or 300 mesh copper).Diamond knife, slides, toluidine blue, gridsIncluded
Labour$50/hour
Grid stainingStaining with uranyl acetate, lead citrate, or uranyless.Staining solutionsIncluded
Labour$50/hour
Tem imaging (Phillips CM10)Tem imaging by histology staff.UM faculty and affiliates$75/hour
External$120/hour
USBSaving images to USB for clientUSB$8
Digital transferDigital image transfer via online platformN/A$0

Forms

All sample submissions must include the completed forms and the signed estimate. While forms are available on our website, our team is also available to assist with form completion during the consultation process.

To request services for histology, electron microscopy, or imaging, please ensure you complete the following required forms:

Note: Alternate formats for these documents are available upon request. Please contact us at histology_services@umanitoba.ca for more information.

Contact us

For service requests or consultations, please call 204-789-3508 or email histology_services@umanitoba.ca.

Histology

We offer standard paraffination and frozen tissue preparation for fixed biological research material.

Consultation

Our consultation process allows us to tailor our services to your specific research needs. 

We utilize a wide range of advanced staining techniques, enabling us to provide detailed visual insights into protein abundance, distribution, and localization. These techniques, which include common histological stains as well as specialized methods, offer the precision required to highlight specific cellular and tissue components. 

Through immunohistochemistry, immunofluorescence, and other advanced assays, we help you identify and analyze key biomarkers, ensuring that you gain a comprehensive understanding of your samples at both the structural and functional levels. 

Whether you're exploring cellular dynamics, disease mechanisms, or developmental processes, our team is equipped to support your project with state-of-the-art staining methods and expert guidance.

Paraffin

We offer standard paraffin embedding preparation, a widely used and reliable technique for tissue preservation and sectioning. 

This method involves embedding your samples in paraffin wax, allowing for long-term storage and optimal preservation of cellular architecture. 

The process includes tissue fixation, dehydration, clearing, and embedding in molten paraffin, followed by sectioning into thin slices for histological examination. This approach is ideal for a wide range of tissue types and provides excellent preservation of morphological detail, making it suitable for routine histopathological analysis. 

Additionally, our facility supports advanced staining techniques for further examination of tissue structure, protein localization, and other molecular characteristics, enabling a thorough investigation of your samples.

Pricing - paraffin

The pricing shown here is for UM and affiliated investigators. For industry pricing, please contact us.

TaskDescriptionItemCost
Processing tissue for paraffinPlacing tissue that arrives in fixative (already grossed) into cassettes and labeling for the tissue processorFixative, formalin, dehydrating alcohol, xylene and paraffin included in processing charge
1-24 cassettes$50
Labour$50/hour
Embedding tissue in paraffinTaking the cassettes from the tissue processor and setting them in paraffin in the correct orientation, then filling the mold with paraffin to create the blockParaffin from embedding machineIncluded in tissue processing charge
Cutting paraffin sectionsSectioning the desired number for sections/slide from each block as requestedSuperfrost plus$1.80/slide
Knife bladeincluded   
Labour$50/hour
Staining paraffin sectionsStaining and cover slipping slides as requestedSpecial stainsSee staining page for special stains
H&E$4/slide
Labour$50/hour
IHC, IF and other assaysIHC or IF on the prepared slides with antibodies as well as other requested assays (kit)Custom pricing for individual requests$130/run plus all required supplies and chemicals
Labour$50/hour
Imaging/analysisImage the slides using brightfield or fluorescent microscope. (Taking pictures, performing analysis where required, counting, measuring, graphing)UM$50/hour self imaged
$75/hour staff imaged
External/Industry$75/hour self imaged
$100/hour staff imaged
USBSaving image to USB for clientUSB$8
Digital transferDigital image transfer via online platformN/A$0
Slide boxSlide storage/transportBox$15

Cryo

For optimal results, proper preparation of your tissues is crucial. Adhering to these guidelines ensures the best possible outcomes for your frozen tissue samples:

Size

  • Gross the samples to a reasonable size before fixation or snap freezing.
  • Smaller pieces provide better fixation and are easier to section.
  • Tissue thickness should not exceed 5mm, and the length/width should be a maximum of 1.5cm.
  • Focus on the relevant tissue for your research; remove any unnecessary attached tissue or organs. For larger specimens, provide a biopsy instead.

Fixation

  • Fix all tissues in an appropriate fixative based on your intended use.
  • Be aware that certain fixatives may interfere with staining or immunohistochemistry protocols.
  • Common fixatives include 10% buffered formalin or 4% formaldehyde (prepared from commercially purchased 37% stock liquid or powder).
  • After 24 hours of fixation, wash tissues thoroughly in 1x phosphate-buffered saline three times for five minutes each.

Cryoprotection with Sucrose Infusion

  • Prepare a 20% sucrose solution in 1x phosphate-buffered saline and transfer the tissue into it. Keep the tissue in this solution at 4°C until it sinks (usually overnight).
  • Prepare a 30% sucrose solution in 1x phosphate-buffered saline and transfer the tissue from the 20% solution. Allow it to sink in the 30% sucrose solution at 4°C (usually overnight).

Infiltration

  • Transfer the tissue from the 30% sucrose solution into pure optimal cutting temperature compound or the desired embedding medium for up to 24 hours at 4°C.

Freezing

  • Freeze blocks quickly and correctly to avoid freezing artifacts. Slow freezing results in poor morphology.
  • For unfixed tissues, snap freeze in isopentane/liquid nitrogen within optimal cutting temperature compound and deliver frozen to the histology lab.
  • Ensure that blocks are frozen properly without cracks, and tissue orientation is accurate. Incorrect preparation can lead to freeze artifacts.

By following these guidelines, you will ensure your tissues are optimally prepared for histological analysis and imaging, yielding the best results for your research.

Pricing - cryo

The pricing shown here applies to University of Manitoba (UM) and affiliated researchers. For industry pricing or additional information, please contact us.

TaskDescriptionItemCost
Fixing/embedding tissue for cryo sectioningFix tissues in 4% paraformaldehyde, infuse with 20% and 30% sucrose, infiltrate with OCT and embed tissues in OCT in moldsFixative, PBS, sucrose, OCT, molds, dry ice$15 each
Labour$50/hour
Embedding tissue for cryo sectioningFixed or snap frozen tissue is placed in molds with OCT and frozenOCT, molds, dry ice$7 each
Labour$50/hour
Cryo sectioningSectioning the desired number for sections/slide from each block as requestedSuperfrost plus$1.80/slide
knife blade  included
Labour$50/hour
Staining frozen sectionsStaining and cover slipping slides as requestedH&E$4/slide
Special stainsSee staining page for special stains
Labour$50/hour
IHC, IF and other assaysIHC or IF on the prepared slides with antibodies as well as other requested assays (kit) $130/run
All required supplies and chemicalsvaries
Labour$50/hour
Imaging/analysisImage the slides using brightfield or fluorescent microscope. (Taking pictures, performing analysis where required, counting, measuring, graphing)UM$50/hour self imaged
$75/hour staff imaged
External, imaging done by staff$75/hour self imaged
$100/hour staff imaged
USBSaving image to USB for clientUSB$8
Digital transferDigital image transfer via online platformN/A$0
Slide boxSlide storage/transportBox$15

Staining

Our histology services offer a variety of stains to enhance tissue analysis. Below is a list of available stains, each designed to highlight specific structures and components within your samples.

Available stains include:

Sample drop off

Once your samples are fixed, you have the following options:

  1. Delivery to the histology laboratory

    Bring fixed samples directly to the laboratory for further processing.

  2. Short-term storage

    Store samples in phosphate-buffered saline (PBS) at 4°C if short-term storage is required. Alternatively, store samples in 70% ethanol at room temperature for a limited time.

If submitting cryo samples, ensure they are already blocked and frozen in cryo molds with optimal cutting temperature (OCT) compound or another preferred medium. Make sure the samples are properly frozen to preserve structure and avoid thawing during transport.

When submitting your samples, please remember to:

  • Bring a slide box of sufficient size for the requested slides. If you don't have one, it will be added to your invoice.
  • Complete the necessary forms.

Important: Please contact the histology staff in advance to arrange a time for sample drop-off, ensuring staff availability to accept your samples.

Forms

All sample submissions must include the completed forms and the signed estimate. While forms are available on our website, our team is also available to assist with form completion during the consultation process.

To request services for histology, electron microscopy, or imaging, please ensure you complete the following required forms:

Note: Alternate formats for these documents are available upon request. Please contact us at histology_services@umanitoba.ca for more information.

Contact us

For service requests or consultations, please call 204-789-3508 or email histology_services@umanitoba.ca.

Imaging facility

Our imaging facility contains microscopes for brightfield, fluorescence, slide scanning, super-resolution, live cell imaging and analysis.

Access and training

Training is mandatory for all users. To request training please contact us. We will then arrange a time for training sessions. The length of training is dependent on the user’s previous experience.

 

It is up to Imaging Facility staff and the department head/platform director to decide whether the user has demonstrated adequate understanding of the instrument to be granted unsupervised access.

 

Upon completion of training, users must pass a standard practical comprehension test to be granted full privileges including swipe card access.

Facility use guidelines

New users
All new users must contact histology staff to arrange necessary training and initiate fee payments when applicable. This ensures safe and appropriate use of the equipment.

Booking time on instruments
To keep equipment accessible for all, follow these guidelines for booking time:

  • Booking is managed using calendars located next to each piece of equipment.
  • Users are responsible for honouring the time they book.
  • Billing will be calculated based on booked time and logbook records.
  • Users who do not cancel unused time will be billed.
  • Failure to honour booked times may result in loss of instrument privileges.
  • Bookings are void if users do not arrive within 30 minutes of the booked time, and the equipment becomes available for other users.

Facility use
Maintaining a clean and safe environment is essential. Follow these rules when using the facility:

  • Users must follow the startup and shutdown procedures for each instrument.
  • Gloves are not permitted on any instruments or computers.
  • All users are required to fill in the logbook for each instrument during every use—no exceptions.
  • Instruments must be left in pristine condition after use.
  • Ensure everything is turned off, covered, oil lenses are cleaned, and any rubbish discarded.

Data storage and file transfer
To protect user data, adhere to these data storage guidelines:

  • Data should be stored directly on the R: drive designated for each lab when possible.
  • Data may be temporarily stored on the hard drives of instruments in the D: drive.
  • The facility is not responsible for data stored on these hard drives; leaving data here is at the user’s own risk.
  • Data left indefinitely will be deleted without warning.
  • USB flash drives are not permitted unless newly purchased from the histology lab. If a new USB, CD, or DVD is required, please see histology staff.
  • Users are responsible for their own data.

Problems
Immediate reporting of problems ensures a smooth operation for all users. Please notify histology staff of any issues, including supply depletion (oil, lens paper, cleaning solution), software issues, burnt-out bulbs or filaments, or other equipment-related concerns.

After hours / weekends
If problems arise after hours, on weekends, or on holidays, follow these steps: shut down the equipment, place a sign indicating it should not be used, and contact histology staff at histology_services@umanitoba.ca. For emergencies, call 555 for security or 911.

Equipment

Our imaging and analysis facility provides a variety of equipment tailored to meet diverse research needs, including:

Pricing

The imaging facility operates on a cost-recovery basis, with all fees contributing to the regular maintenance, repair, and necessary upgrades of the equipment.

UM community rates:

  • $50/hour for self-imaged sessions
  • $75/hour for staff-assisted imaging

External users rates:

  • $75/hour for self-imaged sessions
  • $100/hour for staff-assisted imaging

Training rates:

  • $75/hour for UM community
  • $100/hour for external users

For Department of Human Anatomy and Cell Science research groups requiring more than 30 hours of imaging, an annual fee of $1,500 may apply for unlimited access.

Note: The ELYRA PS.1 system must be operated by facility staff. It is billed at $75/hour for UM community members and $120/hour for external users.

Forms

All sample submissions must include the completed forms and the signed estimate. While forms are available on our website, our team is also available to assist with form completion during the consultation process.

To request services for histology, electron microscopy, or imaging, please ensure you complete the following required forms:

Note: Alternate formats for these documents are available upon request. Please contact us at histology_services@umanitoba.ca for more information.

Contact us

For service requests or consultations, please call 204-789-3508 or email histology_services@umanitoba.ca.

Publication statement

Acknowledgment request

We kindly request that you acknowledge the contributions of the Electron Microscopy Core and Histology Services in any resulting publications. Please use the following statement in your acknowledgments:

"The authors acknowledge the Transmission Electron Microscopy Core Platform and Histology Service Lab at the Department of Human Anatomy and Cell Science, Rady Faculty of Medicine, at the University of Manitoba."

Showcasing your work

We are committed to helping you showcase your research. If your publications include acknowledgments of the Transmission Electron Microscopy Core Platform and Histology Service Lab, we invite you to feature them on our website. To request this, please contact the Transmission Electron Microscopy Core Platform and Histology Service Lab.

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Contact us

Histology Services, Imaging Facility, Electron Microscopy Platform
Room 119, 745 Bannatyne Avenue
Basic Medical Science Building
University of Manitoba (Bannatyne campus)
Winnipeg, MB R3E 0J9

204-789-3508