Close up of human tissue under microscope.

Histology Services, Imaging Facility, Electron Microscopy Platform

How to request services

To request histology services, electron microscopy or imaging facility services, please contact the histology lab for a consultation. 

After the consultation, we will provide an estimate for your approval. We will then let you know how to prepare your samples for optimal results and schedule an appointment for sample drop off. Please do not bring samples to the lab without an appointment.

Samples must be accompanied by completed forms (work request form, sample submission form, sample waiver form) as well as the signed estimate. 

It's important to note that the responsibility for analyzing and interpreting the resulting data lies with the principal investigator who provided the samples. Electron Microscopy Core and Histology Services provides the necessary tools and expertise to prepare the samples for analysis, but the actual analysis is the responsibility of the researcher.

Services provided

Paraffin

Overview

We offer standard paraffination preparation.

To set up a consultation to discuss your specific needs or ask any additional questions, please contact the histology lab.

Sample preparation guidelines

Please follow guidelines below to ensure your samples are properly prepared.

Size:

  • Gross your samples to a reasonable size before fixation.
  • Tissues should not exceed 5mm in thickness and should have a maximum length and width of 1.5cm.
  • Smaller pieces provide better fixation and are easier to section.
  • Only include tissue that is significant to your research, removing any unnecessary attached tissue or organs.
  • For larger specimens, provide a biopsy instead.

Fixation:

  • Fix all tissues in an appropriate fixative based on the intended use of the samples.
  • Perfusion fixation is optimal for animal tissues, but immersion fixation is sufficient if the tissue is an appropriate size.
  • Be aware that certain fixatives may interfere with staining or immunohistochemistry conditions.
  • Common fixatives include 10% buffered formalin or 4% formaldehyde prepared from a commercially purchased 37% stock liquid containing methanol or prepared from a powder.

Minimum fixation time:

  • Ensure a minimum fixation time of 24 hours, but it can last up to five days.

Free-floating in fixative:

  • Your tissue sample should be freely floating in fixative with a volume at least 10 times that of the tissue.

Drop-off

After your samples are fixed, you have a few options:

  1. Delivery to the histology lab: You can bring the samples to the histology lab for further processing.

  2. Short-term storage: If needed, you can store the samples in PBS at 4°C or 70% ethanol at room temperature for a short period of time.

When submitting your samples, please remember to:

  • Bring a slide box of sufficient size for the requested slides at the time of sample drop-off. If you don't have one, it will be added to your invoice.
  • Complete the necessary forms, including a work request, sample submission, and waiver forms.

Important: Before dropping off your samples, make sure to contact the histology staff in advance to coordinate and ensure their availability to accept your samples.

Costs

The pricing shown here is for UM and affiliated investigators. For industry pricing, please contact us.

Task Description Item Cost
Processing tissue for paraffin Placing tissue that arrives in fixative (already grossed) into cassettes and labeling for the tissue processor Fixative, formalin, dehydrating alcohol, xylene and paraffin  included in processing charge
1-24 cassettes $50
Labour $50/hour
Embedding tissue in paraffin Taking the cassettes from the tissue processor and setting them in paraffin in the correct orientation, then filling the mold with paraffin to create the block Paraffin from embedding machine Included in tissue processing charge
Cutting paraffin sections Sectioning the desired number for sections/slide from each block as requested Superfrost plus $1.80/slide
Knife blade included   
Labour $50/hour
Staining paraffin sections Staining and cover slipping slides as requested Special stains See staining page for special stains
H&E $4/slide
Labour $50/hour
IHC, IF and other assays IHC or IF on the prepared slides with antibodies as well as other requested assays (kit) Custom pricing for individual requests $130/run plus all required supplies and chemicals
Labour $50/hour
Imaging/analysis Image the slides using brightfield or fluorescent microscope. (Taking pictures, performing analysis where required, counting, measuring, graphing) UM $50/hour self imaged
$75/hour staff imaged
External/Industry $75/hour self imaged
$100/hour staff imaged
USB Saving image to USB for client USB $8
Digital transfer Digital image transfer via online platform N/A $0
Slide box Slide storage/transport Box $15

Sample images

  • Paraffin embedded tissue sections on membrane slides.

    Paraffin embedded tissue sections on membrane slides.

  • Paraffin cassette tissue block library.

    Paraffin cassette tissue block library.

Cryo

Overview

We offer standard frozen preparation.

To set up a consultation to discuss your specific needs or ask any additional questions, please contact the histology lab.

Sample preparation guidelines

For optimal results, it is essential to properly prepare your tissues following these guidelines:

Size:

  • Gross the samples to a reasonable size before fixation or snap freezing.
  • Smaller pieces provide better fixation and are easier to section.
  • Tissues should not exceed 5mm in thickness and should have a maximum length and width of 1.5cm.
  • Include only the tissue relevant to your research, removing any unnecessary attached tissue or organs. For larger specimens, provide a biopsy instead.

Fixation:

  • Fix all tissues in an appropriate fixative based on their intended use.
  • Be aware that certain fixatives may interfere with staining or immunohistochemistry conditions.
  • Common fixatives include 10% buffered formalin or 4% formaldehyde prepared from a commercially purchased 37% stock liquid containing methanol or prepared from a powder.
  • After 24 hours of fixation, wash the tissue in 1x PBS three times for five minutes.

Cryoprotection with sucrose infusion:

  • Prepare a 20% sucrose solution in 1x PBS and transfer the tissue into it. Keep the tissue in this solution at 4°C until it sinks (usually overnight).
  • Prepare a 30% sucrose solution in 1x PBS. Transfer the tissue from the 20% sucrose solution to the 30% sucrose solution at 4°C until the tissue sinks (usually overnight).

Infiltration:

  • Transfer the tissue from the 30% sucrose solution to pure OCT or the desired embedding medium for up to 24 hours at 4°C.

Freezing:

  • Pay attention to freezing blocks correctly and rapidly to avoid freezing artifacts. Slow freezing results in poor morphology.
  • If tissues are unfixed, they can be snap frozen in isopentane/liquid nitrogen in OCT and delivered frozen to the histology lab.
  • Ensure the blocks are correctly frozen without cracks and that tissue orientation is accurate. Incorrect preparation may lead to freeze artifacts.

By following these instructions, you can optimize the preparation of your tissues for further analysis.

Drop-off

After your samples have been fixed, you can deliver them to the histology lab. Alternatively, we accept samples that are already blocked and frozen in cryo molds with OCT or any other desired medium.

When submitting your samples, please remember to:

  • Bring a slide box of appropriate size for the requested slides at the time of sample drop-off. If you don't have one, it will be added to your invoice.
  • Complete the necessary forms, including a work request, sample submission, and waiver forms.

Important: Before dropping off your samples, please arrange with the histology staff in advance to ensure that we are available to accept them.

Costs

The pricing shown here is for UM and affiliated investigators. For industry pricing, please contact us.

Task Description Item Cost
Fixing/embedding tissue for cryo sectioning Fix tissues in 4% paraformaldehyde, infuse with 20% and 30% sucrose, infiltrate with OCT and embed tissues in OCT in molds Fixative, PBS, sucrose, OCT, molds, dry ice $15 each
Labour $50/hour
Embedding tissue for cryo sectioning Fixed or snap frozen tissue is placed in molds with OCT and frozen OCT, molds, dry ice $7 each
Labour $50/hour
Cryo sectioning Sectioning the desired number for sections/slide from each block as requested Superfrost plus $1.80/slide
knife blade   included
Labour $50/hour
Staining frozen sections Staining and cover slipping slides as requested H&E $4/slide
Special stains See staining page for special stains
Labour $50/hour
IHC, IF and other assays IHC or IF on the prepared slides with antibodies as well as other requested assays (kit)   $130/run
All required supplies and chemicals varies
Labour $50/hour
Imaging/analysis Image the slides using brightfield or fluorescent microscope. (Taking pictures, performing analysis where required, counting, measuring, graphing) UM $50/hour self imaged
$75/hour staff imaged
External, imaging done by staff $75/hour self imaged
$100/hour staff imaged
USB Saving image to USB for client USB $8
Digital transfer Digital image transfer via online platform N/A $0
Slide box Slide storage/transport Box $15

Sample images

  • A single tissue section from an OCT embedded frozen tissue, sectioned on a cryotome.

    A single tissue section from an OCT embedded frozen tissue, sectioned on a cryotome.

  • A piece of cryogenic equipment.

    Cryotome for frozen tissue sectioning.

Staining

Using a variety of staining processes, we can provide visual details about protein abundance, distribution, and localization.

To set up a consultation to discuss your specific needs or ask any additional questions, please contact the histology lab.

View available stains

Transmission Electron Microscopy (TEM)

We are grateful for your continued support using our services. We are currently experiencing requests for our services at a level which is greater than our staff capacity. We will be pausing the acceptance of new requests while we work to complete the requests on our waiting list. We can no longer provide fixative/solutions for new samples, or accept samples for processing.

Please do not initiate any animal experiments that require our services at this time.
We can still add your request to our waiting list, however, no samples will be accepted in any capacity. The current waiting list is over 6 months long.

We apologize as we know most groups require sample processing and data much sooner. Our staff are working tirelessly to process your requests and maintain a high level of quality that has earned us this wonderful client base. If you have new requests that are added to our waiting list we will reach out to you when we are ready to accept your samples. Thank you for supporting our work.
 

Overview

We offer TEM services for tissues, cells, and nano-particles using the  Phillips CM10 and JEOL JEM-1400 microscopes.

Overview

Embedding and sectioning:

  • Tissue and cell samples are embedded in Embed 812.
  • Diamond sectioning is used, producing thick sections of 0.5-1um.
  • Toluidine blue staining is applied to these thick sections for orientation, quality control, and documentation purposes.

Thin sectioning and staining:

  • Thin sections of 90-100nm are collected on grids.
  • Staining is performed using uranyl acetate or uranyless and lead citrate.

Imaging:

  • Imaging takes place at magnifications ranging from 800 to 64,000X.

To discuss your specific needs or ask any additional questions, please contact the histology lab to set up a consultation.

Sample preparation guidelines

For best results, follow these guidelines to properly prepare your tissues:

Size:

  • Gross the tissues to 1mm cubes before fixation.
  • Remove any unnecessary attached tissues or organs, providing only the tissue significant to your research. For larger specimens, submit only a biopsy.

Fixation:

  • Fix all tissue or cells in 3% glutaraldehyde in 0.1 M Sorensen's buffer.
  • Coordinate with the histology lab to arrange pick-up of fresh fixative in advance of cell harvest or animal sacrifice.
  • For brain or nerve tissue, a combination of parafomaldehyde and gluteraldehyde may be provided.
  • If using animals, perfusion fixation is crucial for preserving fine structures.

Minimum fixation time:

  • Cells: 2 to 3 hours.
  • Tissue: 3 to 4 hours.

Ensure that your tissue sample is freely floating in fixative with a volume at least 10 times that of the tissue.

Drop off

Once your samples are in fixative or sucrose solution (also may be provided) they may be delivered to the histology lab at a pre-arranged appointment time with the completed paperwork:

A slide box is not required for TEM samples.

Costs

The pricing shown here is for UM and affiliated investigators. For industry pricing, please contact us.

Task Description Item Cost
Buffers and fixative solutions package All buffer and solutions required to appropriately fix cell or tissue material as well as a storage buffer Gluteraldehyde, Sorensen’s, Phosphate Buffer, Sucrose $30/set of solutions up to 50ml
Labour (1 hour) $50/hour
Processing and embedding tissue for EM Post-fixing tissue or cells that arrive (already grossed) in storage buffer through to embedding in resin Osmium tetroxide, alcohol dehydration, propylene oxide, EmBed 812 resin system Included
1-10 blocks $250
Labour, billed as a 6-hour set $50/hour
Sectioning (diamond knife) Thick sectioning and staining with toluidine blue, thin sectioning 90-100nm and placing on desired number of grids (200 or 300 mesh copper) nickel or carbon/formvar available upon special request diamond knife, slides, toluidine blue, grids Included
Labour $50/hour
Staining grids   Uranyl acetate, lead citrate or uranyless, lead citrate Included
Labour $50/hour
Imaging Electron Microscope Phillips CM10 TEM imaging done by histology staff UM faculty and affiliates $75/hour
External $120/hour
USB Saving image to USB for client USB $8
Digital transfer Digital image transfer via online platform N/A $0

Sample images

  • Ribbon of 90-100nm resin embedded tissue sections as cut on an ultratome and diamond knife.

    Ribbon of 90-100nm resin embedded tissue sections as cut on an ultratome and diamond knife.

  • TEM image of a mitochondria.

    TEM image of a mitochondria.

  • TEM image of neural synapse.

    TEM image of neural synapse.

  • TEM image of a cell.

    TEM image of a cell.

Superresolution structured illumination microscopy  
High resolution imaging

Superresolution structured illumination microscopy (SR-SIM) is an advanced imaging technique used to image fine structural details with minimal changes to standard immunofluorescence protocols using conventional dyes.

The resulting image is of high quality with up to 120 nm lateral resolution (X,Y) and 300 nm axial resolution (Z).

This technique uses five different grating frequencies to allow for optimal matching of illumination pattern to laser wavelength and objective lens used.

For more information about SR-SIM, contact Dr. Thomas Klonisch at 204-789-3893.

Sample images

Shown here are fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.

  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.
  • Fluorescently labelled cells imaged in widefield and with structured illumination processing comparison.

Equipment

Training and access request form

To request training and/or access, complete the request form.

Training and access request form

Forms

Use the links below for quick access to our forms.

Publication Statement

The Electron Microscopy Core and Histology Services of the Department of Human Anatomy and Cell Science provide services for the research community. Processing, embedding, sectioning, staining and imaging as requested, will be carried out by the assigned Core/Service staff. The principal investigator whom provided the samples will be responsible for analysis and interpretation of the resulting data.

Please help us acknowledge the work done at our The Electron Microscopy Core and Histology Services. When the work provided by the facility contributes to a publication please include the following statement in your acknowledgements:

The authors acknowledge the Transmission Electron Microscopy Core Platform and Histology Service Lab at the Department of Human Anatomy and Cell Science, Rady Faculty of Medicine, at the University of Manitoba.  

We want to help you highlight your work. As an author with publications acknowledging the Transmission Electron Microscopy Core Platform and Histology Service Lab, You are welcome to feature these publications on our website. Please contact the Transmission Electron Microscopy Core Platform and Histology Service Lab to request posting of your publication.
 

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Contact us

Histology Services, Imaging Facility, Electron Microscopy Platform
Room 119, 745 Bannatyne Avenue
Basic Medical Science Building
University of Manitoba (Bannatyne campus)
Winnipeg, MB R3E 0J9

204-789-3508