BIOINFORMATICS Bookmarks
Courses
- Bio 5495/BME 537:
homework, week 12
- Bioch508 - Syllabus
- A Guide to Molecular Sequence Analysis
- BioComputing Hypertext
Coursebook
- Documentation and Bioinformatics Courses
- http://linkage.rockefeller.edu/wli/bioinfocourse.html
- Bio 5495/BME 537
Computational Molecular Biology
- CSE 590BI, Winter 1998
- CSE 527, Winter 2000
- Biology 68: 2001S
Databases
- FlyBase @
flybase.bio.indiana.edu
- BioWarehouse
Software Overview
- Sequence Database
Searching and Sequence Scoring Methods Tutorial
- Object-Oriented Databases
- Bioinformatics Institute
- MASC: an RHdb Query Tool
- bio.perl.org - Projects
- The
Protégé Ontology Editor and Knowledge Acquisition System
Genetics
- linkage software list
(page 1)
HPC
- Progeniq
- Industrial
Technology Centre Home Page
LIMS
- caLIMS
Markers
- Michelmore
Multiple
alignment
- Zucker, Mult. Alignment
- A Gentle Guide to Multiple Alignment
- Jalview
alignment viewer
- STRAP
- multiple sequence alignment: Interactive Editor STRAP
Online
Resources
- ISREC bioinformatics group
WWW-server
- Profile Server
- MendelWeb Homepage
- The ProDom protein domain database
- The PCR Primers database Home Page
- Bioverse
- Biology
Workbench
- Oxford Univ
BioinformaticsCentre
- NXSensor
Ontologies
- SSWAP
Ontologies
- Ontologies by Keyword
Pattern
Recognition
- Bioinformatics &
Pattern Discovery @ IBM / The Home of TEIRESIAS, MUSCA and DELPHI
- BioProspector
- ORegAnno:
Open Regulatory Annotation
People
& Programs
- Welcome
to the BMERC, Computational Biology ( bioinformatics ), structure
prediction, functional profiles, and genome analysis.
- Canada Bioinformatics Group
- Center For Applied Genomics
- Computational Biology and Informatics Laboratory at
UPenn.
- INCOGEN
- Mendel
Bioinformatics Group
- National Biotechnology Information Facility
- Bioinformatics Centre,
University of British Columbia
- Bioinformatics Program Survey--Hemminger 2003
- http://www.cs.usask.ca/projects/birl/birl.html
Phylogeny
- TreeBASE Schema
Distance
UPGMA
- UPGMA
- Distance Methods
- Evolutionary
relationships of human populations on a global scale -- Nei and
Roychoudhury 10 (5): 927 -- Molecular Biology and Evolution
- NWREpaper_FINAL.pdf (application/pdf Object)
- Distance Methods
- weighbor.pdf
(application/pdf Object)
Bayesian
- Bayesian Phylogenetic Analysis
- Introduction to Bayesian
phylogenetics — Agapow.net
- TreeView
X
- Introduction to Phylogeny
- Phylogenetic Reconstruction
- Mesquite
- PAL:
Phylogenetic Algorithms Library
- Mavric: a python toolkit for phylogenetics
- PAUP*
4.0
- TREEFINDER
- Vanilla
Proteins
- SCOP: Introduction
Similarity
- The Statistics of PSI-BLAST Scores
- http://www.blc.arizona.edu/courses/wardbioinf/salign.html
- Biochemistry Research -
Pearson
- Sequence Database
Searching and Sequence Scoring Methods Tutorial
- Which matrix should I use?
- Weight Matrices for Sequence Similarity Scoring
- The Statistics of Sequence
Similarity Scores
Software
- The ARB project
- Apollo Genome Annotation Tool
- Index of /pub/ARB/
- UVA Software Center
- The Sanger Centre : Informatics Software: Artemis
- The Sanger Centre : Wise2
- Linux for Biotechnology
- CORBA: Linking Biological Databases
- CORBA for Beginners
- GeneCrunch
- Genome Supercomputing
- genetic-programming.com-Home-Page
- GP homepage
- Accelrys
GCG—A comprehensive collection of sequence analysis tools
- GenQuire
- GUIs in Bioinform: Lachlan
H. Bell
- INCOGEN
- IUBio Archive
- Java-based Molecular
Biology Work Bench
- MatrixPlot
- PROPHET
Home Page
- MIRA
- genome assembler
- PUMA (Production)
- The Sanger Centre : EMBOSS: The European Molecular
Biology Open Software Suite
- SciGraphica Homepage - Scientific Graphics and Data
Manipulation
- Working Objects
- Bioinformatics
- Wikipedia, the free encyclopedia
- The
Taverna Project Website
- Biolinux [ Home ]
- NTSys
- Exeter Software
Web
Services and Grids
- Seqhound.usergroup Info Page
- Using Entrez Utilities Web Service with Apache Axis2
for Java
BioMOBY
- BioMoby
- MOBY-S Client Initialization
- APSTC
- http://bioverse.compbio.washington.edu/rpc/
- The Globus Toolkit
- GO Tutorial
- Alfred P. Sloan Foundation
- Gaggle
- bio-computing links
- Bioinformatics.Org: Project Info
- GSC -
Chinook